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Pfam: Database of Protein Families and HMMs
http://pfam.janelia.org/A large collection of multiple sequence alignments and trained hidden Markov models covering many common protein domains. Alignments are included as well as models for 8296 protein families, based on the Swissprot 48.9 and SP-TrEMBL 31.9 protein sequence databases. [GPL]
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